BIOPATTERN Network Of Excellence
"Integrating cooperative research aimed at a pan-European approach:
To the coherent and intelligent analysis of a citizen's bioprofile
To make the analysis of this bioprofile accessible to the individual and the clinicians
To exploit bioprofile information to combat major disease classes."



BIOPATTERN is an FP6 Programme
Friday 30 July 2010
BIOPATTERN Publications
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Year
Total Number Of Publications
Joint Publications (% Of Total)
2008 13 38.4615
2007 138 34.0580
2006 225 21.7778
2005 169 21.8935
2004 58 12.0690
BIOPATTERN Publications
2008
M. E. Blazadonakis and M.Zervakis, 2008, The Linear Neuron as Marker Selector and Clinical Predictor, Computer Methods and Programs in Biomedicine, Elsevier, Accepted Link
 
T.Cassar, K.P. Camilleri, S.G. Fabri, M. Zervakis, S. Micheloyannis, 2008, Window size analysis in ARMA-modelled spectral biomarkers for epileptic children, 6th IASTED International conf. on Biomedical Engineering, BioMed08, Conference, Published Link
 
T.Cassar, K.P. Camilleri, S.G. Fabri, M. Zervakis, S. Micheloyannis, 2008, ARMA modelling for the diagnosis of controlled epileptic activity in young children, 3rd International Symposium on Communications, Control and Signal Processing, ISCCSP 2008, Conference, Published Link
 
V. Sakkalis, C.D. Giurcaneanu, P. Xanthopoulos, M. Zervakis, V. Tsiaras, Y. Yang, and Sifis Micheloyannis, 2008, Assessment of linear and nonlinear synchronization measures for evaluating mild epileptic electroencephalograms, IEEE Trans. Inf. Tech, IEEE, In Press Link
 
V. Sakkalis, T. Cassar, M. Zervakis, K.P. Camilleri, S.G. Fabri, C. Bigan, and S. Micheloyannis, 2008, Time-Frequency Analysis and Modelling of EEGs for the Diagnosis of Controlled Epileptic Activity in Young Children, Computational Intelligence & Neuroscience , Elsevier, Accepted Link
 
Vincent M., Passerini A., Labbe M., Frasconi P. , 2008, A simplified approach to disulfide connectivity prediction from protein sequences, BMC Bioinformatics, 9(20), Published Link
 
B. Hamadicharef, C. Guan, E. Ifeachor, N. Hudson, S. Wimalaratna , 2008, Performance Evaluation and Fusion of Methods for Early Detection of Alzheimer Disease, International Conference on BioMedical Engineering and Informatics (BMEI2008), May 27-30, 2008 - Sanya, Hainan , China, Accepted Link
 
Blad S, Welin A-K, Kjellmer I, Rosén KG, Mallard C, 2008, ECG and Heart Rate Variability Changes in Preterm and Near-Term Fetal Lamb Following LPS Exposure, Reproductive Sciences, -, In Press Link
 
Nykter M, Price ND, Aldana M, Ramsey SA, Kauffman SA, Hood LE, Yli-Harja O, Shmulevich I, 2008, Gene expression dynamics in the macrophage exhibit criticality, Proceedings of the National Academy of Sciences (PNAS), February 12, 2008, vol. 105, no. 6, pp. 1897-1900, 10.1073/pnas.0711525105, Published Link
 
Lukin V, Zriakhov M, Zelensky AA, Egiazarian K, Värri A, 2008, Lossy Compression of Multichannel ECG Based on 2-D DCT and Pre-processing, Proceedings of the International Conference on Modern Problems of Radio Engineering, Telecommunications and Computer Science, TCSET 2008, Publishing House of Lviv Polytechnic, Ukraine, ISBN 978-966-553-678-9, pp. 159-162, Published Link
 
PJG. Lisboa, TA. Etchells, IH. Jarman, MSH. Aung, S. Chabaoud, T. Bachelot, D. Perol, T. Gargi, V. Bourdes, S. Bonnevay, S. Negrier, 2008, Time-to-event analysis with artificial neural networks: an integrated analytical and rule-based study for breast cancer, Neural Networks, Vol 21, No 2, pp 414-426, Published Link
 
IH. Jarman, TA. Etchells, JD. Martin, PJG. Lisboa, 2008, An integrated framework for risk profiling of breast cancer patients following surgery, Art Int Med, Vol 42, pp 165-188, Accepted Link
 
P.Hu, 2008, A framework for bioprofile analysis over grid, PhD Thesis, University of Plymouth, UK, Accepted Link
 
Hu P, Sun L, Ifeachor E, 2008, A framework for bioprofile analysis over grid, IEEE Systems Journal, under review, Submitted Link
 
2007
Zenonas Theodosiou, Ioannis Kasampalidis, Georgia Karayannopoulou, Ioannis Kostopoulos, Mattheos Bobos, Generoso Bevilacqua, Paolo Aretini, Andrea Cavazzana, Michele Menicagli, Antonina Starita, Kleoniki Lyroudia and Ioannis Pitas, 2007, Evaluation of FISH Image Analysis System on Assessing Her-2/neu Amplification in Breast Carcinoma Cases, Breast , Elsevier, Accepted Link
 
Zenonas Theodosiou, Ioannis N. Kasampalidis, Kleoniki Lyroudia, Ioannis Pitas, George Livanos and Michalis Zervakis, 2007, Automated analysis of FISH and Immunohistochemistry images: A review, Cytometry, Wiley, Published Link
 
A. Taktak, L. Antolini, M. Aung, P. Boracchi, I. Campbell, B. Damato, E. Ifeachor, N. Lama, P. Lisboa, C. Setzkorn, V. Stalbovskaya, E. Biganzoli, 2007, Double-blind evaluation and benchmarking of survival models in a multi-centre study, Computers in Biology and Medicine, Elsevier, Published Link
 
C.Setzkorn, A. Taktak, B. Damato , 2007, On the use of multi-objective evolutionary algorithms for survival analysis, Biosystems, 87,1, pp 31-48 , Published Link
 
M ?. Blazadonakis and M Zervakis, 2007, Improving Filter Methods Through Wrapper Approaches - A Breast Cancer Case Study, International Conference on Computational Intelligence in Medicine CIMED07, Conference, Published Link
 
Rajeswari Matam, David Lowe , 2007, Towards Gaining Patient Confidence In, And Acceptance Of The Electronic Patient Health Record: A Steganographic Proposal, Cimed07, Plymouth, Accepted Link
 
Randrianandrasana M F, Lowe D, 2007, Bayesian Approach to Learning Dependency Networks in Biomedical Domains, Third International Conference on Computational Intelligence in Medicine and Healthcare, Plymouth, Accepted Link
 
Virkkala J., Hasan J., Värri A., Himanen S.-L., Müller K., 2007, Automatic detection of slow wave sleep using two channel electro-oculography, Journal of Neuroscience Methods, Vol. 160, 2007, pp. 171-177., Published Link
 
N. Lofgren, N. Outram, A. Flisberg, M. Thordstein, 2007, EEG entropy in full term healthy human neonates, Journal of Neural Engineering, NA, Submitted Link
 
J Luts , A Heerschap , J A K Suykens , S Van Huffel, 2007, A combined MRI and MRSI based multiclass system for brain tumour recognition using LS-SVMs with class probabilities and feature selection, Artificial Intelligence in Medicine, 40 (2007) 87-102, Published Link
 
Koikkalainen J., Hirvonen J., Nyman M., Lötjönen J, Hietala J. Ruotsalainen U., 2007, Shape variability of the human striatum - effects of age and gender, NeuroImage , Vol. 34 No. 1, pp. 85-93., Published Link
 
Nikhil, Visa A., Yli-Harja O., Lin C.-Y., Puhakka J.A., 2007, Knowledge mining of xylose-based fermentative hydrogen production : CHR model based approach. , International Conference on Bioenergy Outlook 2007, Issues, Advances and Opportunities in Biomass Energy, Singapore, 26-27 April 2007 2 p., Published Link
 
Rämö P., Kauffman S., Kesseli J., Yli-Harja O., 2007, Measures for information propagation in Boolean networks, Physica D: Nonlinear Phenomena , Vol. 227 No. 1, pp. 100-104., Published Link
 
Juslin A., Lötjönen J., Nesterov S.V., Kalliokoski K., Knuuti J. Ruotsalainen U., 2007, Alignment of 3-dimensional cardiac structures in O- 15-labeled water PET emission images with mutual information, Journal of Nuclear Cardiology , Vol. 14 No 1, pp. 82-91., Published Link
 
Akhbardeh A., Junnila S., Koivistoinen T., Värri A., 2007, An intelligent ballistocardiographic chair using a novel SF-ART neural network and biorthogonal wavelets, JOURNAL OF MEDICAL SYSTEMS, Feb. 2007, Vol. 31, No. 1, pp. 69-77, Published Link
 
Värri A., 2007, CEN/TC251/ENV FEF14271 review, Presentation in the Joint Meeting of ISO/TC215 - Health Informatics, WG7 - Devices, CEN/TC251 WGIV - Devices, IEEE 11073, and HL7 Health Care Devices (DEV) SIG, Cologne, Germany, 1 May 2007, Published Link
 
Tabus, I., Rissanen, J., Astola, J., 2007, Normalized maximum likelihood models for genomics, Proceedigns of 9th International Symposium on Signal Processing and its Applications, ISSPA 2007, Sharjah, United Arab Emirates, 12-15.2.2007 6 p., Published Link
 
Barna L., Koivuluoma M., Hasu M., Tuppurainen J., Värri A, 2007, The use of electromechanical film (EMFi) sensors in building a robust touch-sensitive tablet-like interface, IEEE Sensors Journal , Vol. 7, No 1, pp. 74-80., Published Link
 
Virkkala J., Hasan J., Värri A., Himanen S.-L., Härmä M., 2007, The use of two-channel electro-oculography in automatic detection of unintentional sleep onset., Journal of Neuroscience Methods, Vol. 163, pp. 137-144., Published Link
 
Akhbardeh A, Junnila S, Koivuluoma M, Koivistoinen T , Värri A, 2007, Applying Novel Time Frequency Moments Singular Value Decomposition Method and Artificial Neural Networks for Ballistocardiography, EURASIP Journal on Advances in Signal Processing , Volume 2007, Article ID 60576, 9 pages, Published Link
 
Happonen A., Koskinen M.O., 2007, Experimental investigation of angular stackgram filtering for noise reduction of SPECT projection data: study with linear and nonlinear filters, International Journal of Biomedical Imaging , 2007, 12 p., Published Link
 
Lamminen H., 2007, Biotunnisteet sähköisissä terveyspalveluissa., Suomen Lääkärilehti, (In Finnish) Vol. 62 No. 12, pp. 1280-1281., Published Link
 
Damato BE, Taktak AFG, 2007, Uveal malignant melanoma: Mortality, Clinical Ocular Oncology, Eds. A. Singh, B. Damato, J. Pe’er, A. Murphree, J. Perry, Elsevier, Philadelphia, Ch 47, pp 277-281 , Published Link
 
J. Löfhede, N. Löfgren, M. Thordstein, A. Flisberg, I. Kjellmer, and K. Lindecrantz, 2007, Classifying burst and suppression in the EEG of post asphyctic newborns using a support vector machine, Proceedings of the 3rd International IEEE EMBS Conference on Neural Engineering, 2007, Published Link
 
J. Löfhede, N. Löfgren, M. Thordstein, A. Flisberg, I. Kjellmer, K. Lindecrantz, 2007, Comparison of three methods for classifying burst and suppression in the EEG of post-asphyctic newborn, Proceedings of the 29th Annual International Conference of the IEEE EMBS, 2007, Accepted Link
 
N. Löfgren, M. Thordstein, N. Outram, 2007, EEG entropy estimation using a Markov model of the EEG for sleep stage separation in human neonates, Proceedings of the 29th Annual International Conference of the IEEE EMBS, , Published Link
 
D. Bacciu, A. Micheli and A. Starita, 2007, Clustering and Feature Ranking by Competitive Repetition Suppression Learning with Application to Gene Data, Proceedings of CIMED 2007, Plymouth, UK, july 2007, Proceedings of Conference ( in press), Accepted Link
 
L. Nicotra, A. Micheli, S. Starita., 2007, Generative Kernels for Gene Function Prediction through Probabilistic Tree Models of Evolution, Accepted for CIBB 2007 - Fourth International Meeting on Computational Intelligence Methods for Bioinformatics and Biostatistics, Portofino Vetta, Ruta di Camogli (Genova), Italy, July 7-10, 2007 , To appear in Lecture Notes on Computer Science – LNCS Lecture Notes in Computer Science , Vol. 4578 (Springer)., Published Link
 
Wang XY, Garibaldi JM, Bird B, George MW, 2007, A Novel Fuzzy Clustering Algorithm for the Analysis of Axillary Lymph Node Tissue Sections, Applied Intelligence, Nov 2007, In Press Link
 
Siira S, Ojala T, Ekholm E, Vahlberg T, Blad S, Rosén KG., 2007, Change in heart rate variability in relation to a significant ST-event associates with newborn metabolic acidosis, Br J Obst Gynec, BJOG. 2007;114:819-23., Published Link
 
M.S.H Aung, P.J.G Lisboa, G.J Postma, L.M.C Buydens, A. Heerschap and T.A Etchells, 2007, Rule Extraction of Brain voxel classification models, CIMED 2007, July, Plymouth, paper 145, Accepted Link
 
Oakley MT, Guichard G, Hirst JD, 2007, Calculations on the Electronic Excited States of Ureas and Oligoureas, Journal of Physical Chemistry, 111: 3274-3279, Published Link
 
Seoane F, Mai L, Persson M, Lindecrantz K, 2007, Electrical Bioimpedance Cerebral Monitoring. A Study of the Current Density Distribution and Impedance Sensitivity Maps on a 3D Realistic Head Model, Proceedings of the 3rd IEEE-EMBS International Conference on Neural Engineering, IEEE, Published Link
 
Seoane F, Mai L, Persson M, Lindecrantz K, 2007, Electrical Bioimpedance Cerebral Monitoring. A Study of the Current Density Distribution and Impedance Sensitivity Maps on a 3D Realistic Head Model, Proceedings of the 3rd IEEE-EMBS International Conference on Neural Engineering, IEEE, Published Link
 
Seoane F, Mai L, Persson M, Lindecrantz K, 2007, Electrical Bioimpedance Cerebral Monitoring. A Study of the Current Density Distribution and Impedance Sensitivity Maps on a 3D Realistic Head Model, Proceedings of the 3rd IEEE-EMBS International Conference on Neural Engineering, IEEE, Published Link
 
Seoane F, Bragós R, and Lindecrantz K, 2007, Current Source for Wideband Multifrequency Electrical Bioimpedance Measurements, IEEE Transaction on Biomedical Circuit and Systems , IEEE, Submitted Link
 
I. N. Kasampalidis, I. Pitas, G. Karayannopoulou, I. Kostopoulos, P. Aretini,G. Bevilacqua, A. Cavazzana, M. Menicagli, A. Starita, Lyroudia, 2007, FISH Image Analysis Using a Modified Radial Basis Function Network, Presented at ISSCS2007, , Iasi, Romania, july 12-13, 2007. , Accepted Link
 
I.Kasampalidis, I. Pitas, G.Karayannopoulou, I.Kostopoulos,P.Aretini, G.Bevilacqua, A.Cavazzana,M.Menicagli, A.Starita,K.Lyroudia, 2007, FISH Image nuclei Segmentation and Spot Detection Using a Modified Radial Basis Function Network, ISSCS2007, Iasi, Romania, Iasi,Romania, Accepted Link
 
B. Hamadicharef, C. Goh, E. Ifeachor, C. Bigan, N. Hudson, 2007, Online tools and services for early detection and care of Alzheimer disease, To appear in the 3rd International Conference on Computational Intelligence in Medicine and Healthcare (CIMED2007), -, Accepted Link
 
M. E. Blazadonakis and M. Zervakis, 2007, Revealing Significant Biological Knowledge via Gene Ontologies and Pathways, 2008 International Conference in Biomedical Engineering and Informatics (BMEI 2008, Conference, Accepted Link
 
M. E. Blazadonakis and M.Zervakis, 2007, Wrapper Filtering Criteria via Linear Neuron and Kernel Approaches, Computers in Biology and Medicine, Elsevier, journal, Submitted Link
 
Z Li, L Sun, E Ifeachor, 2007, Range-based Mobility Estimations in MANETs with Application to Link Availability Prediction, IEEE ICC 2007, 24-28 June, Glasgow, UK, In Press Link
 
Thomas Bermudez, David Lowe and Anne-Marie Arlaud-Lamborelle, 2007, Multimodal Model Fusion of EEG/ECG for Epileptic Seizure Detection, Proceedings of CIMED 2007, Proceedings of Conference (in press), Accepted Link
 
Thomas Bermudez, David Lowe and Anne-Marie Arlaud-Lamborelle, 2007, Schemes for Fusion of EEG and ECG Towards Temporal Lobe Epilepsy Diagnostics, Proceedings of the 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2007, Accepted Link
 
M. ?. Blazadonakis and M. Zervakis, 2007, Support Vector Machines and Neural Networks as Marker Selectors for Cancer Gene Analysis, special volume on Intelligent Systems, , Springer Verlag, Accepted Link
 
V. Sakkalis, 2007, Statistical Quantitative EEG analysis based on Time-frequency and Nonlinear Synchronization methods during Altered States of Consciousness, Technical University of Crete, Department of Electronic and Computer Engineering, Technical University of Crete, Accepted Link
 
Mingmanas Sivaraksa, 2007, Unclassifiability in medical prognosis: example using biopattern gene markers., CIMED 2007, CIMED 2007, Accepted Link
 
Seoane F, Bragós R, and Lindecrantz K, 2007, Current Source for Wideband Multifrequency Electrical Bioimpedance Measurements, Transaction on Biomedical Circuit and Systems, IEEE, Submitted Link
 
P.Kapsalas, P.Maravelaki-Kalaitzaki, M. Zervakis, E.T Delegou, and A. Moropoulou, 2007, Optical Inspection for Quantification of Decay on Stone Surfaces, Journal on NonDestructive Testing and Evaluation , journal, Elsevier, Published Link
 
B.W. Jervis, S.Y. Belal, K. Camilleri, T. Cassar, S. Fabri, D.E.J. Linden, K. Michalopoulos, M. Zervakis, C. Bigan and M. Besleaga, 2007, Comparison of Single Trial Back-Projected Independent Components With The Averaged Waveform For The Extraction Of Biomarkers Of Auditory P300 Eps, CIMED 2007 Proceedings, CIMED2007 Third International Conference on Computational Intelligence in Medicine and Healthcare, Published Link
 
B.W. Jervis, S.Y. Belal, K. Camilleri, T. Cassar, S. Fabri, D.E.J. Linden, K. Michalopoulos, M. Zervakis, C. Bigan and M. Besleaga, 2007, Applying ICA to Single Trial Auditory P300 And CNV Evoked Potentials to Provide Biomarkers, CIMED 2007 Proceedings, CIMED2007 Third International Conference on Computational Intelligence in Medicine and Healthcare, Published Link
 
P.Y. Ktonas, S. Golemati, P. Xanthopoulos, V. Sakkalis, M. D. Ortigueira, H. Tsekou, M. Zervakis, T. Paparrigopoulos, and C. R. Soldatos, 2007, Model-Based Quantification of The Time-Varying Microstructure of Sleep EEG Spindles: Possibility for EEG-Based Dementia Biomarkers, CIMED 2007 Proceedings, CIMED2007 Third International Conference on Computational Intelligence in Medicine and Healthcare, Published Link
 
I. Dimou, M.E. Zervakis, 2007, Designing SVM Kernels for Classifier Fusion, CIMED 2007 Proceedings, CIMED2007 Third International Conference on Computational Intelligence in Medicine and Healthcare, Published Link
 
C. Bigan, M. S. Woolfson, M. Besleaga , 2007, Individual Responses of P300 Evoked Potentials Extraction from Background EEG as a Potential Tool for Separation of Alzheimer Diseased Subjects from Normals, Proceedings of CIMED07, Proceedings of CIMED07, Accepted